Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015942418.1_cds_XP_016485879.1_76768
CDS Infomation

[gene=LOC107806269] [db_xref=GeneID:107806269] [protein=factor of DNA methylation 1-like isoform X2] [protein_id=XP_016485879.1] [location=complement(join(36063..36293,37814..38032,38169..38456,38620..38709,38961..39142,39733..40630))] [gbkey=CDS]
Sequence

ATGAGCAGCAGCTCAGATGAAGAAGTAGAGTTGAGTGACTCTGAGATTTATGAGTTCAAA
GAGAAGCCTTATGAAGAATTACGAACTGGAAAGCTGAGAGTGAAGGGTCCAAATGGGTCC
CTTAGATGTCCCTTCTGTGCAGGGAAGAAAAAACAAGACTACAAGTACAAGGACCTTCTT
CAACATGCTACAGGGGTTGGTAAAGGTTCTGCTAACCGAAGGGCTAAGCAGAAGGCAAAC
CATTTGGCTCTTGCAAAGTATCTGCAAACAGACCTAGTAAATGAGGCCGATCCAATACCT
GCACGTGCTGTGACACCAGAACGTTCAGAACCTGAAAAAACTGAACTGTTCCGTTGGCCT
TGGACTGGGGTTGTCGTTAATATATCAAAGGAAGCAGCAAATGGCAGATCTCTAGACGAT
AAAGAGTACTGGTTGAGAAAGTTTTCCATCTATATGCCTTCGGAAGTCAAGTTTTTCTAT
GATAACCAAGCTAGGGTCTCCGAAGCTATTGTGAGGTTCAATAGTGATTGGACTGGTTTT
AAGAGTGCGATGGAGTTCGAGAAGTCCTTCGAAGCCTCTCACTGCAGCAAACAAGAATGG
AAAGCCGATAGAAGTTGCCCTGGTCCAAATATTTATGGATGGGTTGCTCGCGAAGATGAT
TATATAGCAGAAGGGGCTATAGGAGAATACCTGCGAGAGAAGGGGAAGTTGAAGACGATA
TCTGACCTAATTAATGAAGAAACACATGATAAAAAGAAGGTTGTAGCAAATCTAGCCAAT
GAAATTGACATGAAAAATGAAAATCTAGATAAACTACAGACAAGATTCAATTTGAATACG
CTATCTCTTAGTCAGATGCTTGAGGAGAAAGACATGCTACACCGTGCTTTCTTTGAAGAA
TCAAGGAAGATGCAACGCCTTGCACGTGAACATGTACAGAAGGTCCTGTTAGAGCAGGAA
ATGTTAAGTGTAGAGTTGGAGAGCAAGAAGAAGAAGCTTGATGCTTGGAGCAGAGAACTG
AATAAACGTGAAGCCTTAACTGAGCGAGAAAAGCAAAAGCTTGACGATGAGAAGAAACAG
AATGATGAGAGAAATTCAGCACTTCAAATGGCCTCTGCGGAACAAAGAAAAGCTGATGAG
AATGTCTTAAGACTGGTCGAAGAACAAAAGAGGGAGAAGGAGGAAGCCTTGAGAAAGATA
CTTGAGCTAGAAAGGGAAATAGATGCCAGGCAAAAACTGGAAATGGAAATAGCAGAACTT
AAAGGAAAACTAGAGGTTATGAAGCACCTTGGAGGCAATGATGATGCAGCTGTACAAAAT
AAGATTAAGGAGATGAACGAGGAGCTGAAACAGAAAATGGAGGAGATGGATGATATGGAG
TCCCTGAACCAGACTCTCCTTGCAAAGGAGCGCCAAAGTAATGATGAGTTGCAAGATGCA
CGGCGCACCTTAATTGATGGATTGAAAGAGATAGTGACCAGTGGGCGCTCCCAAATTGGG
ATAAAAAGAATGGGGGAAATTGATGCAAAGGCCTTTCAGAATGCATTGAAGCAGAGATTA
CCAAGTGCAGAAGCTGAAATCAAGGCCTTGGAACTGTGTTCCCTGTGGCAGGAAAATCTA
AAAGCCCAAGACTGGCATCCCTTTAAAACTGTTATGGTTGATGAGTCGCATGTGGAGAGA
ATGATAGATGAGAATGATGAATCATTACAAAAGCTGAAGGAGGAATGGGGGGATGAAATC
TTCAATGCGGTGACGACAGCTCTGAAGGAGATAGAGGAATACAATCCTAGTGGTAGATAC
ATAATTAATGAGCTCTGGAATTTCAAGGAAGGAAGGAAGGCCACGCTGAAGGAAGTTACC
AGCTATATTTTCAAGCAATTGAAGACACATAAGCGCAAGAGGCCATGA

Peptide Sequence

PEP ID

XP_016485879.1
PEP Infomation

PREDICTED: factor of DNA methylation 1-like isoform X2 [Nicotiana tabacum]
Sequence

MSSSSDEEVELSDSEIYEFKEKPYEELRTGKLRVKGPNGSLRCPFCAGKKKQDYKYKDLL
QHATGVGKGSANRRAKQKANHLALAKYLQTDLVNEADPIPARAVTPERSEPEKTELFRWP
WTGVVVNISKEAANGRSLDDKEYWLRKFSIYMPSEVKFFYDNQARVSEAIVRFNSDWTGF
KSAMEFEKSFEASHCSKQEWKADRSCPGPNIYGWVAREDDYIAEGAIGEYLREKGKLKTI
SDLINEETHDKKKVVANLANEIDMKNENLDKLQTRFNLNTLSLSQMLEEKDMLHRAFFEE
SRKMQRLAREHVQKVLLEQEMLSVELESKKKKLDAWSRELNKREALTEREKQKLDDEKKQ
NDERNSALQMASAEQRKADENVLRLVEEQKREKEEALRKILELEREIDARQKLEMEIAEL
KGKLEVMKHLGGNDDAAVQNKIKEMNEELKQKMEEMDDMESLNQTLLAKERQSNDELQDA
RRTLIDGLKEIVTSGRSQIGIKRMGEIDAKAFQNALKQRLPSAEAEIKALELCSLWQENL
KAQDWHPFKTVMVDESHVERMIDENDESLQKLKEEWGDEIFNAVTTALKEIEEYNPSGRY
IINELWNFKEGRKATLKEVTSYIFKQLKTHKRKRP

Transcript Sequence

Gene sequence data has not been registered.